A ternary plot of citrus geneology

(jlauf.com)

168 points | by jlauf 3 days ago ago

36 comments

  • jihadjihad a day ago ago

    A Persian lime is a cross between a Key lime and a lemon? I never would have guessed that, that's really interesting.

    • CGMthrowaway 15 hours ago ago

      Yeah makes sense though. And for those reading Persian lime is the regular lime found in US grocery stores. Kaffir lime (one of the cornerstone species not included on the ternary axes) is the lime used in Thai food

  • CamelCaseCondo a day ago ago

    During lockdown I started growing clementine from seed. One of the interesting details of this genus is polyembryonism: multiple seedlings emerging from one seed. Apparently, one of the seedlings will be a clone of the motherplant and the rest will be the product of pollination/genetic reshuffling. My clementine seeds all had 2 seedlings per seed but other attempts (with lemon I think) yielded 3 or more).

    During my reading I came across a lot of contradictory info about the origin of the clementine: some papers say it’s an unknown hybrid, other clearly state it’s a mutation instead of a hybrid. So it’s interesting to read the hybrid parentage in this triangle, stated with confidence.

    • seszett a day ago ago

      Polyembryony is the reverse of what you think: one embryo is a result of pollination and all the others are clones. The sexual reproduction embryo is often less vigorous and sometimes doesn't develop at all. It makes it easy to reproduce "true" plants, but also makes it difficult to produce hybrids for some species.

    • riffraff a day ago ago

      Chinotto (apparently called mirtle leaves bitter orange in English?) also has some confused origin (perhaps it's a mutation of some other bitter orange, but it's unclear), and afaict it's not in this chart, or I can't find it.

      Citrus fruits are fun.

    • tkfoss 21 hours ago ago

      [dead]

  • interroboink 21 hours ago ago

    I recently learned about the fact that Sichuan peppercorns are actually related to citrus, so was looking for where the connection is... As it turns out[1], there is a "citrus family" (Rutaceae[2]) and a citrus genus (Citrus[3], in that family). The Sichuan plant is a member of the family, but not the genus (that would be Zanthoxylum[4]). Confusing!

      [1] https://news.ycombinator.com/item?id=47248319
      [2] https://en.wikipedia.org/wiki/Rutaceae
      [3] https://en.wikipedia.org/wiki/Citrus
      [4] https://en.wikipedia.org/wiki/Zanthoxylum
    
    Also, this is a pretty good page on citrus (both family and genus): https://www.clovegarden.com/ingred/citrus.html
  • fritzo a day ago ago

    Inheritance is astonishingly more complex than trees, e.g.

    Wong et al. (2024) "A general and efficient representation of ancestral recombination graphs" https://doi.org/10.1093/genetics/iyae100

    • jlauf a day ago ago

      Interesting, going to read more!

  • contubernio a day ago ago

    Couldn't find blood oranges (sanguina in Spanish). Curious to know where they fit.

  • wrboyce 13 hours ago ago

    Interesting read, and nicely follows last week’s Lunchbox Envy where “Oranges” was the subject. A great podcast if you like food and fun facts.

    https://www.bbc.co.uk/sounds/play/p0n1sn05

  • drmpeg 16 hours ago ago

    Meyer lemons from my backyard.

    https://www.w6rz.net/lemons.png

  • ok_dad a day ago ago

    This is cool! I do wish I could search for a specific citrus by name.

    • jlauf a day ago ago

      Thanks! I'll add it when I get a chance.

  • zeristor 18 hours ago ago

    Thanks lovely piece of work.

    I couldn't find Yuzu, I guess I could have looked at the source JSON file, worked out the co-ordinates that find it on the chart, if its there.

    Yuzu seems to be having a bit of a moment, like pistachio nuts.

    • poizan42 18 hours ago ago

      According to wikipedia they are cultivated from a hybrid of mandarin orange and Ichang papeda, the latter being from another wild lineage than the three shown.

      • zeristor 15 hours ago ago

        Indeed, thanks.

        This takes the citrus gram into 3D

        https://en.wikipedia.org/wiki/Papeda_(citrus)

        • poizan42 15 hours ago ago

          You might need several more dimensions (assuming this quoted claim is correct - it does come with a Citation Needed)

          > Recent genetic analysis shows the papedas to be distributed among distinct branches of the Citrus phylogenetic tree, and hence Swingle's proposed subgenus is polyphyletic and not a valid taxonomic grouping, but the term persists as a common name.

          • zeristor 15 hours ago ago

            Good point, as ever.

            So what would be interesting is an interdimensional citrus fruit.

      • antasvara 15 hours ago ago

        From what I can tell, the papeda is included as a sort of addendum in the bottom right corner of the chart.

  • smlacy a day ago ago

    Seems to be missing the Etrog? https://en.wikipedia.org/wiki/Citrus_taxonomy#Citrons

    Also, the "click to show search results" is cool but fails for "Arizona Citron" in obvious ways.

    • jlauf a day ago ago

      There are lots of citruses missing; the ones in the chart are only the ones I could find reliable values for (from the sources at the bottom). I'll add more if I can find other reliable sources. For what it's worth, I think the etrog is basically a pure citron variety.

      Yeah, that's definitely an issue. If I get a chance, I'll curate images to add!

      • vixen99 15 hours ago ago

        Fascinating. Look forward to your update.

    • jsmith99 21 hours ago ago

      I assume the esrog is the primeval citron but I've noticed that Jewish tradition (which rejects the use of hybrid citrons) allows some surprisingly different citrons in practice, popularly associated with Israel, Morocco, Yemen, Corfu etc. These differ considerably in eg rind thickness.

    • madcaptenor a day ago ago

      Apparently it's also known as the Greek citron, but I don't see it under that name either.

    • s0rce a day ago ago

      I think the etrog is not a hybrid so it would overlap with the citron

    • pazimzadeh a day ago ago

      I couldn't find the Seville orange, or what Iranians call Narang

      Nevermind, they have the "Sevillan Sour Orange" and a few other sour oranges

    • Fordec a day ago ago

      Also appears to be missing Yuzu and Sudachi

  • lameda a day ago ago

    This is very cool, thank you for building it! I remember reading about the mess of citrus genealogy in John McPhee's Oranges (wonderful book).

  • hammock a day ago ago

    Missing kumquats (and calamondins and mandarinquats)

    • s0rce a day ago ago

      they discuss that, they were not hybridized to the same extent. They do discuss the key lime ancestry as orthogonal, it would be cool to use a tetrahedron instead to show that.

  • davidw a day ago ago

    Now I wish I could try all of these.

    • s0rce a day ago ago

      There is an annual citrus festival in Riverside, CA where many hybrids are developed.

    • dheera a day ago ago

      Just walk around San Jose residential neighborhoods, all the combinations are literally dropping everywhere.

      • cwmoore a day ago ago

        There was a great pomelo tree around the corner from me a few years back.